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Tars Li's Projects

badirate icon badirate

Estimating gene family turnover rates by likelihood-based methods

bio-ml icon bio-ml

Command lines for the BIO-ML resources

chatgpt_wallfree icon chatgpt_wallfree

GPT 学术优化 (ChatGPT Academic) 免翻墙教程。ChatGPT无疑是提高生产力的重要工具,也可以是科研的好帮手,但是它最大的不便之处包括但不限于以下两点: (1)不免费。即便付费,缴费也有一定的门槛,而且价格不便宜。 (2)需要科学上网。即通俗说法中的“翻墙”。虽然,搞科研的人使用科学上网并不罕见,但是部署到境内个人设备,总归有被检测到的风险。 本教程旨在缓解或解决以上两点痛点需求,适合个人和课题组生产环境。

cobra icon cobra

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

deeplearning-500-questions icon deeplearning-500-questions

深度学习500问,以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述,以帮助自己及有需要的读者。 全书分为18个章节,近30万字。由于水平有限,书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作,联系[email protected] 版权所有,违权必究 Tan 2018.06

deposcope icon deposcope

A comprehensive approach to detecting phage depolymerases in their genomes.

dnabert icon dnabert

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

esm icon esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

gggenes icon gggenes

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

maskrc-svg icon maskrc-svg

Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG

metquest icon metquest

Enumerating biosynthetic pathways in metabolic networks

miceco icon miceco

Various functions for analysis of microbial community data

panaroo icon panaroo

An updated pipeline for pangenome investigation

pdftable2excel icon pdftable2excel

把一些国企或事业单位的PDF公告解析成xls表格的python脚本

pigc icon pigc

The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.

progen icon progen

Official release of the ProGen models

ptu_paper icon ptu_paper

Scripts and data used for the PTU definition paper

python4datascience.ch icon python4datascience.ch

从0开始接触Python处理数据科学问题。包含Python0基础入门、科学计算工具入门、数学与计算机基础入门、统计学习入门。

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