talalhossain Goto Github PK

abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

blast-tutorial

bowtie2

A fast and sensitive gapped read aligner

dbscan-swa

deep_learning_for_image_processing_practice

deepbinner

a signal-level demultiplexer for Oxford Nanopore reads

genomegtftools

convert various features into a GFF-like file for use in genome browsers

get_best_hit_blast_tabular

This script let you get the list of the best hit from BLAST search in tabular form

ggplot2

An implementation of the Grammar of Graphics in R

grabb

GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using reference sequences and NGS data.

gubbins

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

inphared

Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.

localblast

A short tutorial on how to run local BLAST.

medaka

Sequence correction provided by ONT Research

megalodon

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

nanopolish

Signal-level algorithms for MinION data

panakeia

Prokaryotic Pangenome Analysis

pantagruel

a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome

perlscripts

some small perl scripts

phageboost

Rapid discovery of novel prophages using biological feature engineering and machine learning

phispy

Prediction of prophages from bacterial genomes

porechop

adapter trimmer for Oxford Nanopore reads

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

q2ont

Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2

roary2fripan

Formats Roary output for viewing in FriPan

talalhossain

wolf_of_investopedia

Investopedia Bot that is able to generate consistent positive returns by exploiting a small timing discrepancy between Google Finance stock data and the Investopedia stock simulator site.