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bcaboot

covid-19-immunity

Differential equation models that incorporate waning immunity

covid19

Estimating the generation interval for COVID-19

developments_tau_statistic

Code analysis for "Developments in statistical inference when assessing spatiotemporal disease clustering with the tau statistic" Pollington et al.

docs

Documentation for rtools40 and R for Windows

epidemic-deconvolution

Example code for deconvolving epidemic time series

epiestim

A tool to estimate time varying instantaneous reproduction number during epidemics

epiforecasts.github.io

central website

hhh4addon

idspatialstats

inla-workshop-glasgow2019

Workshop on spatial and spatio-temporal models using INLA

itsa

Code analysis for "Impact of intensified control strategies on incidence of visceral leishmaniasis in a highly endemic district of Bihar, India: an interrupted time series analysis" Kumar, Siddiqui, Pollington et al.

mvstpp

Mark variograms for spatio-temporal point processes

neldermead

:exclamation: This is a read-only mirror of the CRAN R package repository. neldermead — R Port of the 'Scilab' Neldermead Module

param-estimation-sir

Example R and Matlab code for ML estimation with an SIR model, as well as for examining identifiability and uncertainty using the Fisher information matrix and profile likelihoods.

smerc

Statistical MEthods for Regional Counts

spatstat

Development version of 'spatstat' package ..............................

stpp

Space-Time Point Pattern Simulation, Visualisation and Analysis

tableview.jl

A Tables.jl compatible table viewer based on ag-grid

tau-statistic-speedup

An optimised implementation of the tau statistic (relative prevalence ratio form), originally from R's IDSpatialStats package.

timeroutputs.jl

Formatted output of timed sections in Julia

vlspatiotemporalmodelling

Code for 'Inferring transmission trees to guide targeting of interventions against visceral leishmaniasis and post–kala-azar dermal leishmaniasis'