Comments (3)
'No sink reactions detected, even though there are 3.' This could be fixed with the latest PR to memote opencobra/memote#470, if not remind me on slack or gitter or the memote issue tracker!
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@ChristianLieven will for sure open corresponding issues in memote, just needed to point them out here as well ;)
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Update: All these issues have been already solved (as it can be seen in the memote report of yeast 8.4.2), after some updates in memote and this addition in cobratoolbox earlier this year.
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Related Issues (20)
- refactor: reduce dependencies modelTests HOT 1
- Feat: A python function for anaerobic condition setup HOT 1
- feat: KEGG pathway annotation
- feat: metSMILES annotation HOT 1
- feat: single ec-code annotation per reaction HOT 5
- feat: Uniprot annotations for all genes HOT 5
- cerevisiae with radiation simulation is possible? HOT 1
- References for anaerobic benchmarking HOT 10
- fix: add missing standard-GEM file
- some memote workflows are failing HOT 3
- Update according to genome update in 2021
- check Lys2 and Leu2 gene associations HOT 1
- Fructose transport is represented as a symporter instead of facilitated diffusion
- reaction references
- duplicate metabolites identified HOT 1
- unable to locate model when running io.read_yeast_model() in Python HOT 1
- Proposed changes to the anaerobic model HOT 2
- feat: function to report if flux vector is ΔG-compatible
- bug:spelling error for r_1024 "enxyme" HOT 2
- reactions r_0533, r_0534, r_0535 appear not balanced HOT 2
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