Comments (4)
mihai-sysbio
commented on June 3, 2024
1
It seems that the Matlab code moving the files has no effect. I suspect what it has to do with the git command being slow, so the Matlab command is invoked before the git clone step finished. If so, then this is fixed by changing how the commands are invoked.
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mihai-sysbio
commented on June 3, 2024
1
It was a good idea to change check_call to check_output, but to solve the problem the base branch of the pipeline has to be different than the pull_request_target in config.ini. Things look promissing in line 5
INFO:main:Pipeline started on branch fix/issues-with-scripts-folder
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mihai-sysbio
commented on June 3, 2024
1
Alright, this has been resolved.
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IVANDOMENZAIN
commented on June 3, 2024
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Related Issues (16)
- Branching system for new ecModels HOT 2
- Automation of ecModels pipeline HOT 21
- feat: add getModelParameters for various organisms
- feat: automate version retrieving from models HOT 6
- discard mihai-sysbio/GECKO HOT 1
- update dependencies automatically
- handle non-GitHub GEMs HOT 1
- fix/check grRules for Oxphos reactions in iSM996 HOT 3
- Create GEM-specific PRs when changes are introduced into the ecModels repository files HOT 2
- "[protein]-" tags go missing from metabolite names HOT 1
- test
- ecYeast - oxygen exchange lower bound can't be set to -1
- PRs do not get automatically created
- cobrapy won't read eciML1515 because of ascii character 32 in reaction id
- ecHuman1 not updated
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