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angsd icon angsd

Program for analysing NGS data.

ascend icon ascend

Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.

foldsfs-cpp icon foldsfs-cpp

Script to fold probabilistic 2D joint site frequency spectra (cf ANGSD), where the minor allele is defined as the allele with lowest count across the two populations.

itara icon itara

Repository of various functions and scripts.

mcswan icon mcswan

Multiple-collision Coalescent SWeep ANalyzer. McSwan is a R package to infer the extent and the dynamics of natural selection in the genomes of single or multiple populations.

vanaprabhava icon vanaprabhava

Method to simulate species abundance spectra in a metacommunity using a modified Kingman coalescent.

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