Comments (1)
@zhaoc1 also mentioned problems with sample identifiers with dashes due to how the text patterns are set up in the mapping rules. Using subdirectories based on sample ID may both help with that and also clean up the main mapping output directory.
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Related Issues (20)
- Prep for v4.1.0 release
- Install update all fails with weird paths HOT 1
- Improve benchmarking reports to include relevant info
- Error in rule aggregate_results HOT 7
- tmpdir not reassigning in fastqc in rule_fastqc HOT 8
- Use --cluster-status to properly end cluster workflows HOT 1
- Replace komplexity with heyfastq
- How to provide empty cutadapt_opts? HOT 2
- speed up remove_low_complexity
- Fix snakemake version
- Replace config-based resource allocation with functional
- Update to snakemake v8
- Increase unit testing and split into separate workflow
- virtual linux-parellel HOT 9
- Allow extension include and exclude in sunbeam run
- Add envmodules for rules that support it
- More informative error when proper executor isn't installed HOT 1
- Running install.sh with source appears to crash bash's autocomplete
- Slurm executor still not getting job name
- Restructure containerization
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