stveep Goto Github PK

bioruby-plates

Library for working with 96-well plate annotations, including rearranging to 384-well+

bioruby-sam-mutation

Parsing and mutation calling from SAM, CIGAR and MD:Z.

bioruby-samtools

Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-

biovim

Reverse-complement sequence search plugin for Vim

celigo-ruby

Ruby methods for parsing Celigo output files

crisp.icr

crisprion

Ruby classes for parsing SAM files and the MD:Z tag generated by BWA. Geared towards annotating CRISPR-induced mutations (relative to a given expected cleavage position) from Ion Torrent sequencing data.

grid

kinase-dependency-profiling

R scripts used to analyse data for "Large-Scale Profiling of Kinase Dependencies in Cancer Cell Lines" (http://dx.doi.org/10.1016/j.celrep.2016.02.023)

lsf

Simple job submission to LSF for Ruby

ofn-install

Ansible scripts for provisioning and deploying Open Food Network

openfoodnetwork

Connect suppliers, distributors and consumers for the sale and purchase of local produce

pb-pool

Pooled barcoded transposon screen analysis

ruby-ensembl-api

A ruby API to the Ensembl database

screens

R code for analysing drug screens (multi wells and pools)

slack-pubmed

Utility to spam a slack channel with pubmed search results

stveep.github.io

tfl-journey

TFL journey time optimiser

tidyscreens

transposon

transposon-sanger

Mapping PB integrations from Sanger (e.g.) sequencing data

uhom

Microhomology simulation script

vim-examples

Examples and installation instructions for vim intro at Ruby Hacknight