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Stepan Ovchinnikov's Projects

pegp icon pegp

PEGP (protein evolutionary genomics pipeline). A software tool for protein homology search, phylogenetic tree construction with annotations (taxonomy, domain architecture, genome context), and reconstruction of phyletic pattern with identification of paralogs

repr-genome-download icon repr-genome-download

Utility scripts to download all complete, latest, and representative RefSeq genomes with one representative per taxonomic rank of interest according to NCBI Taxonomy database.

tree-annotation icon tree-annotation

R scripts to annotate protein phylogenetic trees with data, annotate species trees with protein phyletic patterns and plot

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