Comments (2)
Hi @Hallalster! Thank you for your interest in chimeraviz. Unfortunately mm10 was not supported before version 1.5.1 of chimeraviz.
I'm closing this issue, but maybe I can help you get to R version 3.5. Can you try following the instructions on this page: https://cran.r-project.org/bin/linux/ubuntu/ ? That is:
- Add
deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/
to the bottom of your/etc/apt/sources.list
file. - Execute
sudo apt-get update && sudo apt-get install r-base
If that works out then you can install Bioconductor 3.7. Open R and execute:
source("https://bioconductor.org/biocLite.R")
biocLite()
biocLite("chimeraviz")
If that works out as well you should be good to go :)
from chimeraviz.
Another option is using Docker. http://stianlagstad.no/developing-a-bioconductor-package-with-rstudio-and-docker/ might help you.
from chimeraviz.
Related Issues (20)
- Question: what are the red bands on the chromosome? HOT 4
- Assignment to global environment HOT 1
- plot_fusion function not finding "SPFQ" or "CADM2" transcripts in an edb object that has them. HOT 2
- Why is it impossible to use plot_fusion_transcript_with_protein_domain without a BAM file? HOT 1
- Support ChimPipe HOT 1
- coverage issue in plot_fusion_separate HOT 2
- How to make fusioncatcher data compatible to chimeraviz HOT 4
- Chromosome not labeled correctly? HOT 4
- Support Fusion-Bloom
- Travis build fails
- plot_fusion_transcript_with_protein_domain(): error plotting upstream domains HOT 2
- Failed to create reference fasta file HOT 4
- How to input STAR-SEQR output? HOT 1
- Dependency on deprecated ArgumentCheck CRAN package HOT 1
- 2 question with chimeraviz HOT 3
- Custom genomes HOT 2
- Error during the execution of plot_fusion HOT 5
- Failed to create EnsDb HOT 1
- No coverage data for plot_fusion HOT 2
- Fusion transcript plot with protein domain annotations HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from chimeraviz.