Coder Social home page Coder Social logo

Comments (3)

stianlagstad avatar stianlagstad commented on July 20, 2024

Hi! Thank you for your interest in chimeraviz. Could you please run sessionInfo() and paste the result here? The problem might be that you're using the previous version of Bioconductor and thus the old version of chimeraviz. Here, under "Update Installed Bioconductor Packages", are instructions for how to upgrade Bioconductor and the package you've installed.

from chimeraviz.

raunakms avatar raunakms commented on July 20, 2024

sessionInfo()
R version 3.4.1 (2017-06-30)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252

attached base packages:
[1] grid stats4 parallel stats graphics grDevices utils datasets methods base

other attached packages:
[1] chimeraviz_1.0.4 ensembldb_2.0.4 AnnotationFilter_1.0.0 GenomicFeatures_1.28.5 AnnotationDbi_1.38.2 Biobase_2.36.2
[7] Gviz_1.20.0 GenomicRanges_1.28.6 GenomeInfoDb_1.12.3 Biostrings_2.44.2 XVector_0.16.0 IRanges_2.10.5
[13] S4Vectors_0.14.7 BiocGenerics_0.22.1

loaded via a namespace (and not attached):
[1] ProtGenerics_1.8.0 bitops_1.0-6 matrixStats_0.52.2 bit64_0.9-7
[5] RColorBrewer_1.1-2 httr_1.3.1 rprojroot_1.2 tools_3.4.1
[9] backports_1.1.1 R6_2.2.2 DT_0.2 rpart_4.1-11
[13] Hmisc_4.0-3 DBI_0.7 lazyeval_0.2.1 colorspace_1.3-2
[17] nnet_7.3-12 gridExtra_2.3 bit_1.1-12 curl_3.0
[21] compiler_3.4.1 htmlTable_1.9 DelayedArray_0.2.7 rtracklayer_1.36.6
[25] scales_0.5.0 checkmate_1.8.5 readr_1.1.1 RCircos_1.2.0
[29] stringr_1.2.0 digest_0.6.12 Rsamtools_1.28.0 foreign_0.8-69
[33] rmarkdown_1.6 base64enc_0.1-3 dichromat_2.0-0 pkgconfig_2.0.1
[37] htmltools_0.3.6 BSgenome_1.44.2 htmlwidgets_0.9 rlang_0.1.4
[41] RSQLite_2.0 BiocInstaller_1.26.1 shiny_1.0.5 BiocParallel_1.10.1
[45] acepack_1.4.1 VariantAnnotation_1.22.3 RCurl_1.95-4.8 magrittr_1.5
[49] GenomeInfoDbData_0.99.0 Formula_1.2-2 Matrix_1.2-10 Rcpp_0.12.13
[53] munsell_0.4.3 stringi_1.1.5 yaml_2.1.14 SummarizedExperiment_1.6.5
[57] zlibbioc_1.22.0 org.Hs.eg.db_3.4.1 plyr_1.8.4 AnnotationHub_2.8.3
[61] blob_1.1.0 lattice_0.20-35 splines_3.4.1 hms_0.3
[65] knitr_1.17 biomaRt_2.32.1 XML_3.98-1.9 evaluate_0.10.1
[69] biovizBase_1.24.0 latticeExtra_0.6-28 data.table_1.10.4-3 httpuv_1.3.5
[73] gtable_0.2.0 ggplot2_2.2.1 mime_0.5 xtable_1.8-2
[77] survival_2.41-3 tibble_1.3.4 GenomicAlignments_1.12.2 memoise_1.1.0
[81] cluster_2.0.6 interactiveDisplayBase_1.14.0 BiocStyle_2.4.1

from chimeraviz.

stianlagstad avatar stianlagstad commented on July 20, 2024

It looks like you're using an older version of R. Try to install version 3.4.2 so that you can install Bioconductor 2.6. That should get you chimeraviz 1.4.0, which has the plot you're interested in :)

from chimeraviz.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.