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2018-acmbcb-workshop

NCI Cloud Resources Workshop https://stevetsa.github.io/post/acmbcb-ncicr/

addon

atacflow

An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter

attain-hackathon-team-see-sharp-

Attain Hackathon page for See Sharp

awesome-biomedical-data-science-training

awesome-data-science-workshops

with a focus on biomedical data science

awesome-fhir-apps

awesome-metadata

A list of resources for metadata tools, standards and/or development

awesome-microbes

List of computational resources for analyzing microbial sequencing data.

awesome-nih-cloud-and-data-science-resources

A collection of cloud-based resources at the NIH

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

awesome-tcm

Description List of computational resources for analyzing traditional chinese medicine (TCM) or herbal medicine.

bioc2017_tcga_gtex_bof

This repository contains a brief outline for a 'Birds-of-Feather' (BOF) session to meet and discuss analyzing publicly available cancer data from TCGA & GTEx

biscuit

R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.

blackburn

A Hugo theme built using Yahoo's Pure CSS

blast_plus_docs

book-socialmediaminingpython

Companion code for the book "Mastering Social Media Mining with Python"

bugs_and_drugs

A Versatile Antibiotic Resistance Pipeline

cgchack

Basic scripts for the CGC hackathon

cgcr

Basic R package for working with the NCI Cloud Pilots

cgpbox

Core calling tools in a convenient docker image

chiron

Tools and utilities for running Dockerized metagenomics tools in the Cloud

chiron-core

chiron-humann2

https://github.com/stevetsa/Chiron

chiron-metacompass

https://github.com/stevetsa/Chiron

chiron-metaviz

chiron-phlan

chiron-qiime

chiron-valet

ci4cc-informatics-resources

Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.