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amp-pd-workflows

Pipeline definitions used to construct AMP-PD data products

bam2x

extract information from bam (sequence alignment) files and generate tables for further analysis.

braincode

Script and pipeline for BRAINcode project

circlecutter

Visualization toolkit for splicing QTL and circularization QTL

circrna

code for two circRNA projects

code_umass

backup code for Umass project

correlation

correlate expression with histone modifications (and TFBS)

dl_computefest_2017

Harvard Computefest 2017 Deep Learning workshops

dnaseq

pipeline to process DNA sequencing data e.g. WES, WGS, and target sequencing

dockstore-tool-bamstats

A repo for the BAMStats command, used as the tutorial for Dockstore

donglab.org

Source code for Dong Lab website

ea-utils

Automatically exported from code.google.com/p/ea-utils

exodus

Code for the EXODUS paper

git-intro

Intro to git

git_tutorial

One-hour online tutorial of git.

gwspia

Improved signaling pathway impact analysis with gene weights

hd_chipseq

study the differential ChIPseq signal btw HD and controls

humanbraincode.org

code for humanbraincode.org

kent

UCSC Genome Browser source tree. Stable branch: "beta".

mel-ngs

ngs code for mel lab

pd5d

Repository for PD5D project, incl. snRNAseq and scATACseq

peer

A factor analysis package

pipeline-standardization

pirna2

code for the pre-pachytene piRNA project

powereqtl

R package for power analysis for eQTL study

smallrna

source code related with small RNA

spliceplot

Visualization toolkits for splicing QTL and circularization QTL

spliceplot2-1

Visualization toolkit for splicing QTL and circularization QTL

sterding.github.io

code for sterding.com

try_git