Comments (6)
Hi Michael,
thank you for your interest in our work. I will be happy to read the pre-print when it is available, as this will be one of the few showcases for simulation-based joint modeling!
We have been playing with the idea of estimating hierarchical models for a while and actually want to enable this in the upcoming future
branch of BayesFlow. For that, we have started with the "simpler" problem of hierarchical model comparison, for which we will soon have a pre-print and open-source code.
As for the multilevel estimation you describe, there is still work to be done, but we are positive that we will achieve this in the upcoming months. One challenge here is that multilevel neural estimation requires hacky transformations of the neural architectures in order to properly account for all dependencies implied by the underlying graphical model. Stay tuned!
Best,
Stefan
from bayesflow.
Here is a short conference talk on our integrated single-trial joint modeling work using BayesFlow (mentioned about midway through the video):
https://www.youtube.com/watch?v=WB7mIyc_1dw
The preprint is almost done!
from bayesflow.
Hi, I was wondering if there is any news about this?
from bayesflow.
Really cool stuff! Looking forward to reading the pre-print!
from bayesflow.
Here is the preprint! I definitely look forward to the future of this research with hierarchical models.
from bayesflow.
Stay tuned! The hierarchical
branch currently features everything needed for the model family Michael described. We are currently doing some systematic benchmarking against Stan before the code becomes ready for "production" and expect to have a pre-print and some tutorials quite soon.
from bayesflow.
Related Issues (20)
- Change Support / Acknowledgements HOT 1
- Publish as conda installable package
- Parallelize Test Workflows HOT 2
- `test_time_series_transformer` occasionally fails
- Make heavier use of `pytest.fixture`
- Diagnostic plots do not do so well with simple (one-parameter) models HOT 2
- Remove code duplication from diagnostics module HOT 1
- Add tests for model comparison
- Links in the table of contents of the example notebooks do not work
- Dependency problems HOT 1
- Backport dependency fixes to releases/master HOT 1
- pip install v1.1.5 fails on Mac (M1) HOT 1
- OOM after ~ 50 epochs HOT 10
- bayesflow breaks existing tensorflow installation HOT 5
- Affine coupling flows underperforming with current settings on streamlined-backend
- OfflineDataset should not require both batch_size and batches_per_epoch
- Loss not shown in keras output HOT 4
- streamlined-backend DeepSet
- Implement LSTMNet for time series embedding
- InvertibleNetwork error (Input 0 of layer "dense" is incompatible with the layer) HOT 1
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from bayesflow.