stcmz Goto Github PK

Type: User

Location: Pittsburgh, PA

stcmz's Projects

This repository contains the raw input, intermediate and output data involved in developing the advanced antibody design protocol for humanized J3.

Data repository for the comparison of RoseTTAFold, SWISS-MODEL and ABodyBuilder in antibody modelling from plain amino acid sequence.

A command line offline database for GPCR numbering.

IsAb example data for Antibodies D44.1 and Cemiplimab.

An extended variant of idock which was originally developed by @HongjianLi.

MCCS (Molecular Complex Characterizing System) examples for papers published on BIB (Briefing in Bioinformatics)

Docker image with the MCCS toolchain and all third-party software used in the MCCS protocol pre-configured and installed.

MCCS (Molecular Complex Characterization System) example data for virtual screening in DrugBank drugs for the SARS-CoV-2 3CL structure.

MCCS (Molecular Complex Characterization System) example data for scoring and clustering GPCR crystal structures.

Experimental data of the study on characterizing the binding features of inhibitors and modulators in SARS-CoV-2 main protease using MCCS.

This repository will host all MCCS (Molecular Complex Characterizing System) examples for NPROT (Nature Protocols)

This repository contains all in-house command-line tools served in the MCCS protocol.

A command line analysis tool for residue energy contribution vectors.

This repository contains the library implementation of the Fixed-Width Ordered Binary (FWOB) file format.

A command line tool for fetching molecular PDB files and splitting protein chains.

A command line measurement tool for molecule models.

A command line tool for fixing problematic chemical elements in PDBQT files.

A command line tool for renumbering protein sequence in PDB/PDBQT molecular models.

Video Hotkeys is a browser extension that enables YouTube-like hotkey experience for video websites.