Comments (3)
Thanks for the bug report! You have spookily good timing- a fix for this was posted to the active feature branch of LocusZoom.js about an hour ago. My next goal will be to integrate the changes into LocalZoom.
Since it's part of a larger body of work, this may take 1-2 weeks. In the interim, if you are comfortable with doing something "developer-ish", you can manually clear the reference variant via the browser javascript console. With the LocalZoom plot open, this would be something like:
lz_plot_1.state.ldrefvar = null ; lz_plot_1.applyState();
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Fantastic! Thank you - the console command works nicely. Glad that I submitted an already-fixed bug, makes life easier for everyone ;-)
from localzoom.
The newest localzoom release incorporates this and other bugfixes. (sorry for the delay- we added a bunch of other features too, like BED files and user-provided PLINK LD)
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Related Issues (11)
- option to select LD reference HOT 1
- Improve error message for large regions HOT 1
- Stating the expected headers HOT 2
- How to change the LDserver setting HOT 2
- Use Build 38 GWAS with Build 37 PheWAS HOT 1
- Are allele frequency columns auto-detected? HOT 2
- Allow thresholds for what to display HOT 1
- Rework UI to better use screen space
- Y-axis does not render correctly when Infinity -log10pvalue is present HOT 3
- Default to same settings when loading multiple tracks? HOT 1
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from localzoom.