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Name: Shirley Steffany Muñoz Fernandez
Type: User
Company: University of Sao Paulo
Twitter: drssmufer
Location: Brazil
Name: Shirley Steffany Muñoz Fernandez
Type: User
Company: University of Sao Paulo
Twitter: drssmufer
Location: Brazil
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
16S rRNA amplicon sequencing analysis workflow using QIIME2
R scripts for Analysis of Composition of Microbiomes (ANCOM).
Site to help biologists wade their way into bioinformatics.
Canadian Nutrient File 2015 data in a R package
General purpose package containing useful functions for microbiome analysis pipelines
Compare different differential abundance and expression methods
R Package for Calculating Healthy Eating Index (HEI), Alternative Healthy Eating Index (AHEI), Dietary Approaches to Stop Hypertension (DASH), Mediterranean Diet (MED), Dietary Inflammation Index (DII) for the NHANES, ASA24, DHQ, and other dietary assessments
Visualization of Functional Enrichment Result
USDA Nutrition codes Tree
Generally Applicable Gene-set Enrichment for Pathway Analysis
HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.
Query KEGG for pathways from KEGG Orthologs (KOs).
Linear Programming Diet Experiments
MaAsLin2: Microbiome Multivariate Association with Linear Models
An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studies using random effects models
Various functions for analysis of microbial community data
microbiome R package
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.
R package for microbiome biomarker discovery
Visualize microbiome data with black magic ggtree
MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
Neural networks for microbe-metabolite interaction analysis
AI Toolkit for Healthcare Imaging
Code for a shinyapp that calculates nutrition values for food and recipes
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.