srynobio Goto Github PK

biotools

Collection of Bioinformatic tools.

callings-nf

GATK RNA-Seq Variant Calling in Nextflow

clingen-data-model

Documentation for data model of ClinGen

clinomic

Moose based perl libraray to create clinical genomic files from GVF, and VCF files.

cvdo

Collection of script and CVDO.sh used to build the Cardiovascular Disease Ontology

eight-letters

Eight Letters, Most Words

fqf

FastQForward implementation of the of the UGP/UCGD pipeline

go-vmc

Go library and toolkit using the VMC Data model for exchanging sequence variation.

gobyexample

gqt

A genotype query interface.

graphite

Graphite - Graph-based variant adjudication

gvf-variant

Perl scripts to upload database with GVF, 1000Genome and Cosmic file

heimdall

Package for the monitoring and administration of UGP-GNomEx and UGP/UCGD analysis pipelines.

iobo

IOBO Images to Ontologies.

jibe

Simple validation tool used to compare two versions of a VCF file.

nicuwatch

Public Version of the UCGD NICUWatch Pipeline

rex

A framework for server orchestration and to simplify system administration

salvo

Slurm command and job launcher

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

servertools

Collection of scripts to help in server maintenance.

ugpp

UGPp

vaast-wiki

VAAST/pVAAST Documentation and Wiki.

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

vmccl

Command line lightweight implementation of the VMC SHA-512 algorithm