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Systems Biology at University of Michigan's Projects

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Using gene expression data to identify regulatory interactions between transcription factors and target genes.

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Condition-specific Antibiotic Regimen Assessment using Mechanistic Learning

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Fitting time-course metabolomics onto genome-scale metabolic models for inferring metabolic activity.

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Another tutorial and resource for using docker to launch web applications

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epigenome scale metabolic modeling for cancer metabolism

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Modeling the metabolic changes during the epithelial-to-mesenchymal transition.

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Integrating the transcriptional regulatory network with genome-scale metabolic models.

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Implementation of INDIGO (INferring Drug Interactions using chemoGenomics and Orthology) as a Python package.

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Metabolism And GENomics-based Tailoring of Antibiotic regimens: predicts the impact of pathogen environment on antibiotic potency based on chemogenomic data.

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Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors.

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