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sohnjangil's Projects

clustor icon clustor

A clustering tool for reference assisted whole genome de novo assembly

fastk icon fastk

A fast K-mer counter for high-fidelity shotgun datasets

htslib_howto icon htslib_howto

Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts

ivp icon ivp

Iterative Vecscreen Pipeline

lastz_analysis icon lastz_analysis

A tool for analyzing lastz alignment result generated using "--format=general" option to find structural variations or to perform super-scaffolding guided by reference genome

manta icon manta

Structural variant and indel caller for mapped sequencing data

mgzip icon mgzip

A multi-threading implement of Python gzip module

ntcard icon ntcard

Estimating k-mer coverage histogram of genomics data

perga icon perga

Paired End Reads Guided Assembler.

pgzip icon pgzip

A multi-threading implement of Python gzip module

picual icon picual

A fast, c-based pickling library with some helpful features for pickling and multiprocessing

samblaster icon samblaster

samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.

svaba icon svaba

Structural variation and indel detection by local assembly

xgboost icon xgboost

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow

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