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2018_phd_toolbox_course

PhD toolbox course is meant to give you an introductory background in bioinformatics

berlin2018

GWAS course in Berlin

bio-retrieveassemblies

bioconda-recipes

Conda recipes for the bioconda channel.

biol525d

Course material for UBC Biol525D

biopython

Official git repository for Biopython (converted from CVS)

boss-miniprojects

coronavirus_visualization_and_prediction

This repository tracks the spread of the novel coronavirus, also known as SARS-CoV-2. It is a contagious respiratory virus that first started in Wuhan in December 2019. On 2/11/2020, the disease is officially named COVID-19 by the World Health Organization.

demographic_inference_with_selection

All input and output files used for simulations and for MSMC and fastsimcoal2

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

domestic_chicken-comparative-population-genomics

This is the first attempt in 2017.7, Kunming CAS

epigenetics_workflow

Pipeline for RRBS data analysis without a reference genome

exploration_cleansing

fastq-to-vcf

gatk_snp_calling_snakemake

gatk_workflow

gbs-pcinnamomi

gbs_shell_scripts

genviz.org

Genomic data interpretation and visualization Workshop

go_enrichment

Transcripts annotation and GO enrichment Fisher tests

gwas_proj

GWAS

h3agwas

GWAS Pipeline for H3Africa

how-to-build-a-machine-learning-model

Code for Chapter 19 - A Step-By-Step Tutorial On How To Build A Machine Learning Model

hpc_and_cloud_computing_pipelines

Introductions to high throughput/performance and cloud computing

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

intro-to-rnaseq-hpc-gt

Introduction to RNA-seq using HPC

introduction-to-rad

labs

Rmd source files for the HarvardX series PH525x

manhattan-plots

This repo provides a tutorial on how to plot manhattan plots using Fixative index(fst) values in python

markravinet.github.io

Github website