Comments (7)
When executing cmake .
I got the following log:
-- MsgPack was not found. Make sure MSGPACK_LIBRARY and MSGPACK_INCLUDE_DIR are set.
-- Configuring done
-- Generating done
-- Build files have been written to: /path/CCMpred
But I have installed msgpack through yum install msgpack
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Hi @DingXiangYuanZhiXing,
Can you give some extra information about the distribution you are using? If you are using yum to satisfy the dependencies, you will want to install jansson-devel and msgpack-devel.
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from ccmpred.
Yes, thanks. You will need to install msgpack-devel and jansson-devel with yum.
If you are still getting errors after installing these two libraries, please start from fresh, post the cmake
and make
command you are using and the full output and I might be able to help you debug it.
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After I delete the whole folder and start with git clone
again, I solved the bug. But I got the following warning
make
Scanning dependencies of target conjugrad
[ 5%] Building C object lib/libconjugrad/CMakeFiles/conjugrad.dir/src/conjugrad.c.o
[ 10%] Building C object lib/libconjugrad/CMakeFiles/conjugrad.dir/src/debug.c.o
[ 15%] Building C object lib/libconjugrad/CMakeFiles/conjugrad.dir/src/arithmetic_ansi.c.o
[ 21%] Building C object lib/libconjugrad/CMakeFiles/conjugrad.dir/src/conjugrad_cuda.c.o
[ 26%] Building CUDA object lib/libconjugrad/CMakeFiles/conjugrad.dir/src/conjugrad_kernels.cu.o
[ 31%] Linking CUDA static library libconjugrad.a
[ 31%] Built target conjugrad
Scanning dependencies of target ccmpred
[ 36%] Building C object CMakeFiles/ccmpred.dir/src/ccmpred.c.o
[ 42%] Building C object CMakeFiles/ccmpred.dir/src/sequence.c.o
[ 47%] Building C object CMakeFiles/ccmpred.dir/src/util.c.o
[ 52%] Building C object CMakeFiles/ccmpred.dir/src/io.c.o
[ 57%] Building C object CMakeFiles/ccmpred.dir/src/evaluate_cpu.c.o
[ 63%] Building C object CMakeFiles/ccmpred.dir/src/parseopt.c.o
[ 68%] Building C object CMakeFiles/ccmpred.dir/src/reweighting.c.o
[ 73%] Building C object CMakeFiles/ccmpred.dir/src/numdif.c.o
[ 78%] Building C object CMakeFiles/ccmpred.dir/src/meta.c.o
[ 84%] Building C object CMakeFiles/ccmpred.dir/src/evaluate_cpu_omp.c.o
[ 89%] Building C object CMakeFiles/ccmpred.dir/src/evaluate_cuda.c.o
[ 94%] Building CUDA object CMakeFiles/ccmpred.dir/src/evaluate_cuda_kernels.cu.o
In file included from /path/CCMpred/src/evaluate_cuda_kernels.cu:3:0:
/usr/local/cuda-10.2/targets/x86_64-linux/include/math_functions.h:54:2: warning: #warning "math_functions.h is an internal header file and must not be used directly. This file will be removed in a future CUDA release. Please use cuda_runtime_api.h or cuda_runtime.h instead." [-Wcpp]
#warning "math_functions.h is an internal header file and must not be used directly. This file will be removed in a future CUDA release. Please use cuda_runtime_api.h or cuda_runtime.h instead."
^
In file included from /path/CCMpred/src/evaluate_cuda_kernels.cu:3:0:
/usr/local/cuda-10.2/targets/x86_64-linux/include/math_functions.h:54:2: warning: #warning "math_functions.h is an internal header file and must not be used directly. This file will be removed in a future CUDA release. Please use cuda_runtime_api.h or cuda_runtime.h instead." [-Wcpp]
#warning "math_functions.h is an internal header file and must not be used directly. This file will be removed in a future CUDA release. Please use cuda_runtime_api.h or cuda_runtime.h instead."
^
[100%] Linking CUDA executable bin/ccmpred
[100%] Built target ccmpred
Will the warning prevent me from using CUDA? Thank you very much!
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By the way, can I remove the folder after make
?? Or I need to put bin
folder somewhere else so the program can find it? Thank you very much!!
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Will the warning prevent me from using CUDA? Thank you very much!
It's just a warning. I don't think this will cause any problems.
By the way, can I remove the folder after make?? Or I need to put bin folder somewhere else so the program can find it?
You have two options:
- either you keep the folder and start ccmpred out of this folder.
- you use
make install
to install it into a folder of your choice. (See also this for how to set the folder). If you go with this option you can delete the build folder.
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Related Issues (20)
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- Errors when using make HOT 4
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