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aradeepopsis

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

awesome-python-cn

Python资源大全中文版，包括：Web框架、网络爬虫、模板引擎、数据库、数据可视化、图片处理等，由「开源前哨」和「Python开发者」微信公号团队维护更新。

bio_tools

Useful bioinformatic scripts

biocode

Bioinformatics code libraries and scripts

bioinformatic-resources

bioinformatics101

cleaner_wrasse_genome

Labroides dimidiatus (Bluestreak cleaner wrasse)

genespace

genomesyn

We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a necessary complement to the study of genomic synteny and structural variation and its visualization tools.

hic-data-analysis

General analysis of HiC data, including compartment A/B, domains and loops.

itips

Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data

linkview

DNA序列比对结果 可视化展示工具

maize_v4_te_annotation

scripts and intermediate files used to annotate TEs in Jiao et al.

pbbioconda

PacBio Secondary Analysis Tools on Bioconda

phyltr

Phylogenetic Analysis of Long Terminal Repeat Retrotransposons

pygenometracks

python module to plot beautiful and highly customizable genome browser tracks

smartie-sv

calling SVs from Blasr contig level alignments

subphaser

Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.

tdgp

my 3D genome pipeline and scripts repository

vg

tools for working with genome variation graphs