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Sarvesh Nikumbh's Projects

acronym icon acronym

ACRONYM (Acronym CReatiON for You and Me)

archr icon archr

archR: Identifying promoter sequence architectures de novo using NMF

awesome-deepbio icon awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

cager icon cager

Mirror of Bioconductor's CAGEr package repository

deep-review icon deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

hicplotter icon hicplotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

higlass icon higlass

Fast contact matrix visualization for the web.

juicer icon juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

nimfa icon nimfa

Nimfa: Nonnegative matrix factorization in Python

pybbi icon pybbi

Cython wrapper to UCSC BigWig and BigBed library

remake icon remake

Make-like declarative workflows in R

seqarchr icon seqarchr

seqArchR: Identifying (promoter) sequence architectures de novo using NMF

seqarchrplus icon seqarchrplus

Downstream analysis plots for (promoter) sequence (architecture) clusters

tadtool icon tadtool

TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.

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