Comments (4)
I do not see the error in the log file but perhaps for some reason, it was not caught. Since I am not able to reproduce the error on my side, I will need to ask you for some help.
I have three suggestions.
- Try running
make.sh
on your machine. That may solve the issue. - Let me know what version of java you are running.
- Can you see if the error is reproduced if you run on a different input, say the small test files included with the package?
Thank you.
from astral.
-
make.sh returns "make.sh: command not found"
-
java -version
openjdk version "11.0.11" 2021-04-20
OpenJDK Runtime Environment (build 11.0.11+9-Ubuntu-0ubuntu2.20.04)
OpenJDK 64-Bit Server VM (build 11.0.11+9-Ubuntu-0ubuntu2.20.04, mixed mode, sharing) -
The code runs smoothly on the 1KP-genetrees.tre test file
A side note: astral.5.7.7.jar completed the task on the same file (locus75loci.treefile). Still trying to figure out what's happening with astral.5.15.4.jar. Thanks for the advice!
from astral.
To build, go to ASTRAL directory and try ./make.sh
or bash make.sh
.
If the problem is only reproducible with your input file, it would be helpful to send me the file (email it to [email protected]).
PS: glad to hear 5.7.7 finished. 5.15.4 is a multi-threaded version of the same algorith, so you do not need to run 5.15.4 if 5.7.7 works fine.
from astral.
I reinstalled ASTRAL-MP and everything is working! The multi-threaded version is a lot faster (on a workstation with 44 cores). Thanks for all your help!
from astral.
Related Issues (20)
- error in installing astral-mp HOT 3
- ASTRAL-MP quits when -T 1 HOT 2
- Taxa mapping file
- freqQuad empty HOT 1
- Inferred tree does not have the highest quartet score HOT 3
- What is the meaning of the figure in the branch when I just use default parameter? HOT 1
- Error: Unable to initialize main class phylonet.coalescent.CommandLine HOT 4
- How to show the results of 'freqQuad.csv' by DiscoVista?
- compilation error: Source option 6 is no longer supported. Use 7 or later. HOT 2
- Output species tree with a tip named 'ROOT'
- Confused about description of 'EN' HOT 3
- test_data/simulated_14taxon.default.tre missing HOT 3
- Regarding combining individual gene trees into one file HOT 2
- Final normalized quartet score greater than 1 HOT 1
- Coalescent units (branches) of length zero? HOT 2
- Error in running the tool: Input tree error HOT 1
- Error message regarding gene trees input file format HOT 2
- Bootstrap support values are same for all terminal branches HOT 2
- Multi-locus Bootstrapping
- OOM error when calculating distance matrix
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from astral.