sminot Goto Github PK

ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

asmngs18

ASMNGS18 - 2018 Conference Details

btc-sc-modules

btc-scrna-pipeline

A Nextflow pipeline for single-cell RNA-Seq dataset

compose-spec

The Compose specification

containers

Bioinformatics containers

deenurp

16S rRNA gene sequence curation and phylogenetic reference set creation

docker

Dockerfiles

easybuild-life-sciences

Howto and implementation documentation

fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases

hugo-theme-stack-starter

A quickstart template to create a Hugo blog using hugo-theme-stack

maliampi

Maximum Likelihood Amplicon Pipeline

midas_nextflow

Running Midas using nextflow

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

parsnp

phip-flow

A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets

picard_demux_snakemake

A quick Snakemake pipeline for converting BCL files to fastq and unaligned bam files.

pyodide

Pyodide is a Python distribution for the browser and Node.js based on WebAssembly

quantms

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

wiphy_hiv

x-gene-expression

Reproducing "Sex-Biased Gene Expression and Evolution of the X Chromosome in Nematodes"