slieped Goto Github PK

abagen

A toolbox for working with Allen Human Brain Atlas microarray expression data

adaptivepele

AdaptivePELE is a Python package aimed at enhancing the sampling of molecular simulations

analysis-of-network-centrality-measures-in-python

Within this work, several experiments in Oldham et al. paper that is conducted in MATLAB, is coded up using Jupyter Notebook.

awesome-network-analysis

A curated list of awesome network analysis resources.

bigscale2

Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

brainsmash

Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity

broccoli

BROCCOLI: Software for Fast fMRI Analysis on Many-Core CPUs and GPUs

combatharmonization

Harmonization with ComBat

drlcomplex

Deep reinforcement learning for protein complex modeling

dw-possum

Simulate realistic diffusion-weighted MR data

fury

FURY - Free Unified Rendering in pYthon.

influxdb-slurm-monitoring

kalliope

Kalliope is a modular always-on voice controlled personal assistant designed for home automation.

m2g

NeuroData's MRI to Graphs (m2g) - structural connectome estimation package and pipeline

matplotlib_surface_plotting

matplotlib mesh surface plotter

neuroparc

nxviz

Visualization Package for NetworkX

pymol-pub

Rapid generation of high-quality structure figures for publication with PyMOL-PUB

pysustain

Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.

pyvenn

Python module for plotting Venn diagrams of 2..6 sets

regseg

RegSeg is a simultaneous segmentation and registration method that uses active contours without edges (ACWE) extracted from structural images. The contours evolve through a free-form deformation field supported by the B-spline basis to optimally map the contours onto the data in the target space.

slowest-particle-simulator-on-earth

A half-serious project to generate **very** serious brain explosions.

snfpy

Similarity network fusion in Python

spin-test

This toolbox includes MATLAB scripts to perform a "spin test" of anatomical correspondence between cortical surface maps, as presented in "On testing for spatial correspondence between maps of human brain structure and function," Alexander-Bloch et al., NeuroImage, 2018. See Wiki for a selection of other papers that use this code.

vennt

Dynamic Venn diagrams for differential gene expression

yolo2-pytorch

YOLOv2 in PyTorch