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Slicer SALT site template

About

Project is built on top of Jekyll - simple, blog-aware, static site generator. Jekyll also happens to be the engine behind GitHub Pages, which means you can use Jekyll to host your website from GitHub’s servers for free. Learn more about Jekyll.

Local development

Check if you have all requirements for local environment or consider using this docker image.

To install all development dependencies install Bundler.

    gem install bundler

and run next command from root folder:

  bundle install

To start Jekyll run:

    jekyll serve -w

Site will be available at http://127.0.0.1:4000/directory/ or http://localhost:4000/directory/ (on Windows)

NOTE: in this mode all changes to html and data files will be automatically regenerated, but after changing _config.yml you have to restart server.

Sass(Compass) support

Note: You need to install Node.js

To watch changes of .sass files and compile it to the .css on a fly change property safe: true to safe: false in _config.yml. Note: It works only on local machine, because GitHub runs Jekyll in --save mode

Learn more about Sass development from documentation.

Resource optimizations (optional)

You can optimize images and minify css and javascript automatically (for now only on Windows). But for Mac OS users available amazing tool - imageoptim. Thanks @raphaelsavina for link. Optimize all images by running this script from /automation/images/ folder:

    all_image_optimization.bat -d -jtran -pout -pquant -optip -gsicle -svgo

To minify CSS and JS run minify_js.bat (for Windows) and minify_js.sh (for Linux and MacOS) from /automation/minifying/ folder:

    minify_js.bat

Learn more about available optimization options from documentation.

Documentation

Quick-start guide is not enough? Checkout full documentation.

Contributors

See list of contributors

Maintainers: @tasomaniac and @ozasadnyy.

License

Project is published under the MIT license. Feel free to clone and modify repo as you want, but don't forget to add reference to authors :)

slicersalt's Projects

3dmetrictools icon 3dmetrictools

3DMeshMetric is a visualization tool that computes and displays surface-to-surface distance between two triangle meshes using user-specified uniform sampling (based on the source code of MeshValmet: http://www.nitrc.org/projects/meshvalmet).

dwd icon dwd

A python package implementing the distance weighted discrimination classifier

eigen-git-mirror icon eigen-git-mirror

Git mirror of the official Eigen's repository -- PULL REQUEST MUST BE SENT TO: https://bitbucket.org/eigen/eigen

groups icon groups

Fork for SlicerSALT packaging, official repository at https://github.com/NIRALUser/GROUPS

itkshape icon itkshape

ITK-Based Shape Analysis Filters (e.g Procrustes Alignment for Meshes)

mfsda_python icon mfsda_python

Multivariate Functional Shape Data Analysis in Python (MFSDA_Python) is a Python based package for statistical shape analysis. A multivariate varying coefficient model is introduced to build the association between the multivariate shape measurements and demographic information and other clinical, biological variables. Statistical inference, i.e., hypothesis testing, is also included in this package, which can be used in investigating whether some covariates of interest are significantly associated with the shape information. The hypothesis testing results are further used in clustering based analysis, i.e., significant suregion detection. This MFSDA package is developed by Chao Huang and Hongtu Zhu from the BIG-S2 lab.

rigidalignment icon rigidalignment

Fork for SlicerSALT packaging, official repository at https://github.com/NIRALUser/RigidAlignment

shapeanalysismancova icon shapeanalysismancova

shapeAnalysisMANCOVA offers statistical shape analysis based on a parametric boundary description (SPHARM) as the point-based model computing method

shapepopulationviewer icon shapepopulationviewer

ShapePopulationViewer is a software that allows you to dynamically interact with multiple surfaces at the same time

slicer icon slicer

Multi-platform, free open source software for visualization and image computing.

slicerdentalmodelseg icon slicerdentalmodelseg

Fork for SlicerSALT packaging, official repository at https://github.com/DCBIA-OrthoLab/SlicerDentalModelSeg

slicerdwd icon slicerdwd

3D Slicer extension for Shape Analysis with DWD (Distance Weighted Discrimination)

spharm-pdm icon spharm-pdm

Fork for SlicerSALT packaging, official repository at https://github.com/NIRALUser/SPHARM-PDM

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