Name: Maarten Slagter
Type: User
Bio: PhD student working on computational/bioinformatics problems in tumor immunology at the Schumacher and Wessels labs, Netherlands Cancer Institute
Location: Amsterdam, the Netherlands
Maarten Slagter's Projects
Detecting TCR involved in immune responses from single RepSeq datasets
Bioinformatics Assignments VU 2011
Expression velocity to bulk data
Directory template to start working on a simulation study implemented in C and data processed in R
Make a function cache its result such that any combination of arguments will only need to be evaluated once
build scripts for CC3D - used to automatize CC3D buids
Make Complex Heatmaps
CompuCell3D public source code repository
Analyses for a manuscript by Hoekstra & Slagter et al. involving the use of transcriptomic read-outs to infer the spreading of cytokines through the tumor microenvironment
Probabilistic label transfer from bulk to single cell RNASeq datasets using TRANSACT data integration
Fork and edit from thoughtbot/dotfiles
Script for downsampling BAM files
essentials
A Vim plugin that removes clutter and makes working on a widescreen monitor enjoyable.
A repo of genesets and R functionality to read them
Gibthon Construct Designer - an interactive design tool for primers for use in the Gibson Assembly method.
R package glmnet for estimating lasso and elastic net
Code associated with my immunoediting related work
Official IPython repository
Weighted k-Nearest Neighbors
A general-purpose tool for dynamic report generation in R
Lightweight Toolbox for LaTeX - New Official repository
Fork of https://bitbucket.org/mcgranahanlab/lohhla
General utilities for R development
Converts Stochpy MDL model descriptions to LaTeX
Mathematica-based project template
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent