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PyBites #100DaysOfCode
Public material for CS109
Find and set up your brand new Raspberry Pi
Tools and scripts from the Arkin Lab at UC Berkeley
ARTIC nanopore protocol for nCoV2019 novel coronavirus
Pipelines for assembling NGS data from Seattle flu study.
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
A comparison of different Oxford Nanopore basecallers
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Notes from Raymond Hettinger's talk at PyCon US 2013.
Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmons, B.C. Thomas, A.P. Yelton, and J.F. Banfield (2009). Community-wide analysis of microbial genome sequence signatures. Genome Biology, 10: R85
Bioinformatics code libraries and scripts
BioCompoundML is a software tool for rapidly screening chemicals by chemical properties, using machine learning.
A Docker container that runs bioinformatics software.
Exercises from the 'Bioinformatics Programming using Python' book by Mitchell L Model
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
A single molecule sequence assembler for genomes large and small.
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
PyBites Code Challenges
ActiveState Code Recipes
Clustering cONtigs with COverage and ComposiTion
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.