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Spencer J Fox's Projects

ccbb_intro_biostats icon ccbb_intro_biostats

The goal of this workshop is to provide graduate students early in their studies with a broad set of statistical tools which can be applied to future research problems. The workshop focuses on statistical analysis in R.

epifire icon epifire

A fast C++ API for simulating the spread of epidemics on contact networks.

estimating_rnot icon estimating_rnot

Repository to fit network models to seasonal flu data and estimate the R0 for each season under different types of network models.

mutantigen icon mutantigen

Phylodynamic simulations of influenza virus evolution with antigenic and deleterious mutations, implented in Java. This is a modified version of Trevor Bedford's program Antigen (http://bedford.io/projects/antigen/). For more information on the model, see: http://dx.doi.org/10.7554/eLife.07361

r_intro icon r_intro

Repository for PCL introduction to R material.

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