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battlecode-2016

Repo for team what_thesis from the 2016 MIT Battlecode tournament

battlecode-jeneception

battlecode2015

cb_temp

composable_mnist

Generate handwriting training data by composing characters: numbers using MNIST or names using EMNIST

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

dataacquisition

MATLAB graphical user interface for viewing and recording data using a National Instruments DAQ, tested specifically for the NI USB-6003.

deeplearningclass

dissertation

hmm

Hidden Markov models for biological time-series data, implemented from scratch in Matlab

multichannelio

A clean interface for easy use of Python to communicate with a DAQ from National Instruments via PyDAQmx with the NIDAQmx driver. Tested for the NI USB-6003.

nanoporecode

Code to analyze nanopore data in the Golovchenko lab.

poreview-25o

Tamas Szalay's PoreView for Freshman Seminar 25o

pycytominer

cytominer python package

pyro

Deep universal probabilistic programming with Python and PyTorch

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

seurat

R toolkit for single cell genomics

ssdna_mcmc

MCMC sampler for ssDNA position configurations in solution. Allows the user to specify boundary conditions which correspond to experiments like stretching, trapping, tethering, and pulling on ssDNA, in arbitrary confined geometries.

terra-docker