Name: Miles
Type: User
Company: @nanoporetech
Bio: Senior Bioinformatician | Applications | @nanoporetech - passionate about science, technology, community empowerment, photography and heavy metal.
Twitter: miles_benton
Location: Taranaki, New Zealand
Blog: http://sirselim.github.io/
Miles's Projects
My Key Story presentation for Auckland Research Bazaar 2020
amr_finder
Small tool to convert bedmethyl format to custom bedgraph output
This repository contains codes for all of my blog posts since March 11 2015.
Testing bookdown as an electronic lab book option
bootNet is a wrapper for the fantastic glmnet function - it brings bootstrapping and parallel processing to the elastic-net framework.
My plenary presentation for the CLNR 401 weekend seminar
Short presention on portable sequencing for CMDHB visit to ESR
Exploration of new Zealand COVID19 data from the MoH
small R script to provide quick annotation and gene lists for series of IlmnID's (450k probes)
Notes made available for various data carpentry sessions
Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.
This is an example of using blogdown, hugo and netlify to create and serve an electronic lab notebook.
My eResearch 2021 presentation on portable sequencing technology and it's role in community driven science.
Our presentation on 'real-time' genomics for ESR Data Science Week 2020.
A repository to demonstrate collaboration workflows
A collection of my thoughts around GPUs for genomic analysis and sequencing
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
This repository contains data, results and supplementary information to go alongside our manuscript detailing the validation of immune cell specific methylation markers.
An introductory workshop to GWAS analysis using PLINK and R
An introductory overview of R and the fantastic IDE RStudio - rendered in Gitbook format
A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
A simple LaTeX academic CV template
Teaching materials used by the Research Bazaar
Analysis of song and artist lyrics in R - just for fun!!
This is a basic EWAS tutorial, introducing basic concepts for analysing methylation data
This repository curates and maintains a set of epilepsy 'related' genes in ranked tiers (biological priors)
An online repository to provide an updated personal and professional CV.
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent