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Nicolas Ochsner's Projects

awesome-cv icon awesome-cv

:page_facing_up: Awesome CV is LaTeX template for your outstanding job application

cellcnn icon cellcnn

Representation Learning for detection of phenotype-associated cell subsets

cobrapy icon cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

core icon core

:house_with_garden: Open source home automation that puts local control and privacy first

dataclass-wizard icon dataclass-wizard

A simple, yet elegant, set of wizarding tools for interacting with Python dataclasses.

ete icon ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

fcsparser icon fcsparser

a python parser for reading fcs files supprorting fcs 2.0, 3.0, 3.1

functionink icon functionink

Community detection method for multidimensional networks

homebrew-cask icon homebrew-cask

🍻 A CLI workflow for the administration of macOS applications distributed as binaries

kitty icon kitty

Cross-platform, fast, feature-rich, GPU based terminal

libmpv-rs icon libmpv-rs

A libmpv abstraction written in rust that's easy to use and provides the ability to read next to all video and audio codecs.

mensar icon mensar

Get your daily meal with mensar.

misosoup icon misosoup

Minimal Supplying Community Search with constraint-based optimization methods.

npyz icon npyz

Rust crate for numpy NPY files

phynalysis icon phynalysis

Collection of tools for analysis of virus populations.

piqmee icon piqmee

repository for code and releases of PIQMEE add-on for BEAST2

pypetting icon pypetting

Write worklists for Tecan EVOware pipetting software.

pysam icon pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

qmk_firmware icon qmk_firmware

Open-source keyboard firmware for Atmel AVR and Arm USB families

rainr icon rainr

Rainer's dense matrix rain.

rrobot icon rrobot

R Package to write Tecan EvoWare Worklists & read Data from Tecan iControl XML

scanpy icon scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

smetana icon smetana

SMETANA: a tool to analyse interactions in microbial communities

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