Running mulit_snp on focusscope data leads to error in later stages about celescope

[zhouyiqi91]

You can see the beta version by using pip install celescope== and the default url(in case you are using mirror and the mirror didn't collect the beta version:

$ pip install -i https://pypi.org/simple celescope== 
WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='pypi.org', port=443): Read timed out. (read timeout=15)")': /simple/celescope/
ERROR: Could not find a version that satisfies the requirement celescope== (from versions: 1.1.0, 1.1.1, 1.1.3, 1.1.4, 1.1.6, 1.1.7, 1.1.8b0, 1.1.8, 1.1.9, 1.2.0, 1.3.0, 1.3.1, 1.3.2, 1.4.0, 1.5.0, 1.5.1b0, 1.5.1, 1.5.2, 1.6.0, 1.6.1, 1.7.0, 1.7.1, 1.7.2, 1.8.0, 1.8.1, 1.9.0, 1.10.0, 1.11.0b0, 1.11.0b1, 1.11.0, 1.11.1, 1.12.0b0, 1.12.0, 1.12.1, 1.13.0, 1.14.0b0, 1.14.0, 1.14.1, 1.15.0, 1.15.1, 1.15.2, 1.16.0b0)
ERROR: No matching distribution found for celescope==

And installing 1.16.0b0:

pip install celescope==1.16.0b0 -i https://pypi.org/simple

[zhouyiqi91]

Compared with 1.12.0, the R package vcfR 1.13.0 changed the output format of some files, which caused this problem.
Updating the celescope version to 1.16.0b0 can fix this problem:

pip install celoscope==1.16.0b0

If you don't want to upgrade the version of celescope, you can also lower the vcfR version to 1.12.0.

[jaspitzer]

Hey, thanks for such a rapid response.

After downgrading vcfR to 1.12.0, the problem still persists. Current version shown below:

r-vcfr 1.12.0 r40h8380222_0 conda-forge

The indicated version of celescope is not showing for me.

[zhouyiqi91]

In theory， downgrading vcfR to 1.12.0 should also work. I will take more tests to see why it didn't work.

[zhouyiqi91]

The issue has been fixed in version>1.16.0