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annotator_addons

Soumia Melzi's project. Contains enhancement of the NCBO Annotator. Cf SWAT4LS 2014 papers

bioportal_import_ontologies

Ruby scripts to import ontologies from BioPortal or cropontology.org to a BioPortal Appliance

bioportal_web_ui

A rails application for biological ontologies, (originally from http://bioportal.bioontology.org). But reused in two project at LIRMM.

biotex

Biotex application (automatic extraction of biomedical terms)

biotex_wa

Java (Servlet/JSP) interface of the BioTex application

cladimed2skos

SKOS version of CLADIMED

docker-compose-bioportal

A Docker compose to have a fully working BioPortal development environment

heuristics

lexicon_builder

Dictionnary/lexicon creation from a BioPortal ontology repository

multilingual_mappings

paradise_extractor

purl_servlet

A simple servlet to resolve purl.lirmm.fr URIs

semanticdistance_wa

Project of Pierre and Olivier for semantic distance web application.

sifr_project_java_ontology_processing

Java Scripts to process Ontologies using OWLAPI for the SIFR project

umls-types-assignor

Machine Learning model that learns from Unified Medical Language System Metathesaurus (UMLS Metathesaurus) database tagging new graph in Semantic Network

umls2rdf

These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.

unitexrecognizer

Workflow to use Unitex with the SIFR Annotator

viewpoints_io

This is the ViewpointS import/export module. It index web data, it allow to exchange viewpoints data in xml format, it manage the persistence thanks to Neo4J.

viewpoints_kernel

This is the Kernel module of the ViewpointS API, an awesome java Subjective Knowledge Representation API based one the ViewpointS formalism

viewpoints_wa

Viewpoints Web Application

viewpoints_xps

Misc experimentations of the Viewpoints project.