Comments (3)
Bamdst check the read alignment info from sam FLAG, so I think it should work for any BAM file. You can try and feedback if any issue.
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@shiquan
Thanks for you reply.
Do you have any good solutions to solve memory issues for WGS data? Or is bamdst available for multi-threaded analysis?
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bamdst is designed for WES and panel, and I didn't consider WGS and multi-threads in the first place. Therefore, I need to redesign this tool to support WGS and multi-threads, which may not be necessary, considering so much software already exists for similar jobs.
However, you can still run bamdst for WGS by dividing the whole genome region into small regions.
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Related Issues (20)
- 请问使用您的软件,如何引用? HOT 1
- what should i do? HOT 1
- Segmentation fault (core dumped) HOT 9
- multithreading support HOT 1
- make error HOT 1
- @@ ERROR ABORT @@ bam files are not properly sorted HOT 2
- Suggestion - making a bioconda recipe HOT 1
- make warning
- error 404 Issue installing private repos with devtools HOT 1
- how to accelerate the software bamdst
- Segmentation fault (core dumped) HOT 3
- Multi-genomes HOT 5
- How to change the name of output file HOT 1
- [Target] Coverage (>0x) 100.00% but uncover.bed is not umpty HOT 1
- Coverage difference between bamdst and gatk DepthOfCoverage HOT 1
- AMP data whitout rmdup but different HOT 2
- about the depth.tsv.gz HOT 4
- Error ocurrus when use bamdst to stat WGS bam file HOT 7
- I'd like to know bamdst how to handle overlapping pair-end reads
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