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Shintaro Kinoshita's Projects

calc-cons icon calc-cons

A Rust program that scores residue conservation in a protein.

calc-rsa icon calc-rsa

A Rust program that calculates residues' ASA and RSA in a protein structure by using Voronota.

cif-to-fasta icon cif-to-fasta

A small Rust program that changes mmCIF into FASTA by using 'atom_site' Data Category.

cons-capra07 icon cons-capra07

A Rust program that scores residue conservation a site in a MSA by using Jensen–Shannon divergence.

cons-capra07-plot icon cons-capra07-plot

A Lollipop plot of residue conservation in a MSA based on Jensen-Shannon divergence.

cons-capra07-wasm icon cons-capra07-wasm

An online web application on Rust WebAssembly that scores residue conservation by using JSD.

cons-karlin96 icon cons-karlin96

A Rust program that scores residue conservation a site in a MSA by using Sum-of-pairs measure.

cons-mirny99 icon cons-mirny99

Calculates conservation score a site in MSA using Shannon's information entropy.

cons-valdar01 icon cons-valdar01

A Rust program that scores residue conservation a site in a MSA by using Sum-of-pairs measure.

cons-wang06 icon cons-wang06

A Rust program that scores residue conservation a site in MSA using Relative Entropy.

define-neighbor icon define-neighbor

Define neighboring residues in each central residue by calculating distances among their alpha carbon coordinates.

exon-pred-svd icon exon-pred-svd

A Rust program that predicts protein-coding regions based on Singular Value Decomposition approach.

fqcforsorfml icon fqcforsorfml

Fork to mess around with package and figure out how it ticks.

ggcovcases icon ggcovcases

Lineplot Visualisation of COVID-19 Cases And Deaths.

guiforoctopas icon guiforoctopas

OCTOPAS GUI: A Fast and High-performance Tool to Reduce Redundancy of Phylogenetic Datasets by Referencing Parent Nodes

html-jp-test icon html-jp-test

Rust WebAssembly on GitHub Pages ( language : 日本語 ).

learn-matlab icon learn-matlab

Displaying "hello, world !" and some basic grammars on MATLAB.

lgbtq-plus-plus icon lgbtq-plus-plus

( Language : JP ) A C++ program that provides a quiz game for learning Biology terms.

make-msa icon make-msa

A small Shell Script that constructs MSA from one AA sequence.

multiple-tx icon multiple-tx

A Hyperledger Fabric's demo that attempts branching of blocks throughout transactions

octopas icon octopas

OCTOPAS: A Fast and High-performance Tool to Reduce Redundancy of Phylogenetic Datasets by Referencing Parent Nodes

rem-diff-len icon rem-diff-len

A small Julia program that removes too short and too long amino acid sequences compared with 'query sequence'.

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