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sgblanch's Projects

alignmenttools icon alignmenttools

Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models). Many RDP Projects require this package.

canu icon canu

A single molecule sequence assembler for genomes large and small.

ctsgetr icon ctsgetr

R interface to Chemical Translation Service (CTS)

degenprime icon degenprime

Primer design from single genes to whole gene families for unlocking the tree of life

env icon env

sgblanch's dotfiles for macOS and Linux

lollipops icon lollipops

Lollipop-style mutation diagrams for annotating genetic variations.

metamapr icon metamapr

Network mapping tool for metabolomics + data.

pbs-scripts icon pbs-scripts

User prologue and epilogue scripts for torque-based clusters

probematch icon probematch

Tools for finding (and removing) DNA/RNA primers in sequence reads.

readseq icon readseq

Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.

recongo icon recongo

Reconciliation Service API implementation

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