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Siyuan Feng's Projects

bamdst icon bamdst

a lightweight bam file depth statistical tool

droseu_pipeline icon droseu_pipeline

Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.

evolveresequencepipeline icon evolveresequencepipeline

This is a repository that provides an overview, scripts, and helpful hints for doing our evolve and resequence analysis

fastp icon fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

gatk-protected icon gatk-protected

Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

gea icon gea

practice of genotype-environment association (GEA) analysis

pooldiffcnv icon pooldiffcnv

Some scripts for finding CNVs differing in allele frequency between two pool-seq samples (modified)

poolsnp icon poolsnp

Heuristic SNP caller for pooled sequencing data

poolwgs2snp icon poolwgs2snp

Workflow for processing whole genome pool-seq data and identifying SNPs

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