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followers: 7.0 following: 13.0 repos: 16.0 gists: 0.0

Name: Sergej Ruff

Type: User

Company: University of Veterinary Medicine Hannover

Bio: Passionate about bioinformatics, data science, and coding. I'm on a mission to learn as much as humanly possible... and maybe a bit more!

Location: Hannover, Germany

Sergej Ruff

Data Science/Bioinformatics Enthusiast

Hi there, I'm Sergej. I'm a data scientist interested in statistics, bioinformatics, and biology. But hey, I'm not all about crunching numbersβ€”I'm also a gamer, a bookworm, and I love going to the gym.

Lately, I've been diving into the exciting worlds of machine learning/AI and transcriptomics, particularly focusing on single-cell analysis.

πŸ“š Education:

  • 2018 - 2022: Completed Bachelor's degree in Biology at Leibniz UniversitΓ€t Hannover.
  • 2022 - 2024: Master's degree in Biomedical Data Science at Medizinische Hochschule Hannover.

πŸ† Accomplishments

  • 15 September 2022: Completed Bachelor Thesis titled "Evaluation of Resampling Methods for the Analysis of Single-cell RNA-seq Data" at University of Veterinary Medicine Hannover.
  • January 2023 ... : Student Assistant -> 'Genomics and Bioinformatics of Infectious Diseases' group at the University of Veterinary Medicine Hannover, led by Prof. Dr. Klaus Jung [www.klausjung-lab.de].
  • 29th June 2023: Co-developed my first R package: RepeatedHighDim Version 2.2.0
  • 8th June 2024: master’s thesis titled "Characterization of the virome after liver transplantation" within the AG Computational Virology, led by Prof. Dr. Chris Lauber [TWINCORE].
  • 25th April 2024: Release of RepeatedHighDim version 2.3, incorporating network meta-analysis of gene expression data. RepeatedHighDim Version 2.3.0

πŸ’» Languages:

Python3 R Bash
Python R Bash

πŸ’» Packages And Other Tools:

🐍

Keras Matplotlib NumPy Pandas Plotly scikit-learn Scipy PyTorch TensorFlow

R

RStudio Community: R Markdown RStudio Community: tidyverse data.table ggplot2 devtools usethis limma DESeq2 Seurat

🌟 Others

Markdown

Distro and Text-Editor:

Ubuntu VS Vim PC RStudio
Ubuntu vsc Vim PC RStudio

🌐 Connect With Me:

Instagram Gmail πŸ‘‰ [email protected]

Let's chat!

Sergej Ruff's Projects

-network-meta-analysis icon -network-meta-analysis

Welcome to my Meta Analysis and Network Meta Analysis Learning Repository! This repository serves as a comprehensive collection of resources and notes I created.

errors_warnings icon errors_warnings

Common Errors and Warnings I encounter and want to document for me. Maybe I learn from it and remember not to make the same mistakes ... or at least I will be able to understand the error message next time XD.

google-scholar-scraper icon google-scholar-scraper

A simple R script to scrape data from Google Scholar, extracting publication details like titles, authors, and citations for academic research and analysis.

ml_ai icon ml_ai

Welcome to my GitHub repository! Dive into a curated collection of Obsidian notes and PDFs, brimming with insights on Machine Learning and AI tailored for data scientists. Explore German PDFs alongside a mix of German and English Obsidian notes, designed to enrich your understanding and propel your journey in the realm of data science.

package-development icon package-development

Some Notes and presentations I took while learning how to creat packages in R (and maybe python).

pd_intern icon pd_intern

code I wrote during pd internship (6 weeks). It demonstrates bcftools usage in Python, HPC parallization, decion tree implementation (bad implementation). Mostly good for parallization, bash scripting, sbatch arrays and HPC programming

repeatedhighdim icon repeatedhighdim

A R-package i helped develop for Genomics and Bioinformatics of Infectious Diseases group (Tiho).

settings icon settings

vs code and other settings I use for coding

statistik icon statistik

Statistik Notizen, die ich erstellt habe, um Statistik-Wissen in deutscher Sprache an einem Ort zu sammeln. Obsidian Notizen primΓ€r

virusparies icon virusparies

Create Plots for VirusHuntergatherer virus discovery output (hittables)

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