Comments (2)
@PierreL-B I have the same pbl indeed. bowtie2 aligner should work at the moment but not the star aligner. I'll look into this issue and we should have a quick fix in a few days
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@PierreL-B should be fixed by now with new versions on pypi 0.9.6 for sequana and 0.9.20 for sequana_rnaseq. Not sure this fully solve the star issue (indexing should work but mapping may lead to seg fault in some cases; we are looking into this issue)
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Related Issues (20)
- multiple feature counts HOT 1
- error in bowtie2_index.rules HOT 1
- Error in rnaseq.rules HOT 2
- gene HTML tables are sometimes not appearing HOT 1
- pipeline does not work if fastp rule is deactivate HOT 1
- config file not configure properly for sequanix HOT 1
- remove upset plot if only one comparison is available HOT 1
- rnadiff directory should be cleaned from deset previous results when rerun with --force HOT 1
- Improve output table csv file per comparison HOT 1
- table in HTML reports limited to 20 comparisons HOT 1
- ashr required in new analysis. Need a new singularity HOT 1
- add option to not perform rRNA
- fastp multiqc shows only 1 sample HOT 1
- plot showing most expressed genes HOT 1
- Document the sequana rnadiff standalone including the rtools container
- change aligner -> aligner_choice to be sequanix comptabible
- rRNA is set to empty string (regression)
- consider splitting the HTML page into 1 page per comparison
- plot feature counts does not appear
- simplify start_mapping rule HOT 1
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