This Repository is a variant of the original kBase deployment repo adapted for SEEDtk. For instructions in its use, look at ReadMe.pod in the SEEDtk/utils repo.
seedtk Goto Github PK
Name: SEED Toolkit
Type: Organization
SEED Toolkit's Projects
alexa
Alexa-related files for the SEEDtk project
app_service
Development repo for CLI app services
aurora
Working Test Programs for AuroraGPT
basic
Low-level shared SEED java library
bins.generate
New Metagenome Binning Algorithm
brc.parent
Master project for SEEDtk java modules used by BV-BRC
bvbrc_docs
Repository for BV-BRC Documentation.
chenry_metengapi
A module offering a variety of services to support metabolic engineering use cases
cli.utils
Applications that use PATRIC command-line utilities
core
CoreSEED Java Library
core.utils
Weekly CoreSEED Utilities
distance
Genome distance-measuring methods
dl4j.clusters
Java command for unsupervised clustering
dl4j.decision
Small DL4J library for RandomForest only
dl4j.eval
Deep learning system for annotation consistency
dl4j.jfx
Improved, JavaFX version of DL4J
dl4j.run
Basic Deep Learning Application
dl4j.utils
Utility classes related to the dl4j family of products
dl4j.win
Deep learning GUI application
erdb
erdb.utils
Java ERDB Utilities
excel.utils
Java utilities for reading and writing excel spreadsheets
external_tools
genome.align
Alignment utilities
genome.bins
Binning-related utilites
genome.blast
BLAST utilities for SEEDtk
genome.contigs
Create deep learning inputs from contigs
genome.distance
Compute kmer distance between genomes
genome.download
Commands for converting genomes to GTOs
genome.orfs
generate training and testing sets for ORF-calling
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