seapovedac Goto Github PK
Name: Alejandro Poveda
Type: User
Company: Goethe-Universität
Bio: Ph.D. in Bioinformatics.
Twitter: alejo_fractal
Location: Frankfurt am Main, Germany
Blog: https://www.researchgate.net/profile/Sergio-Poveda-Cuevas
Alejandro Poveda's Projects
cprisma
CPRISMA (version 1.0, 2021) is a bioinformatics program that gives color to multiple sequence alignment based on an input of numerical data.
gromacs
Public/backup repository of the gromacs molecular simulation toolkit
paper_2022_ns1_protein_oligomerization
This repository has several codes to calculate the potential of mean force (pmf) based on radial distribution function (rdf) of protein-protein interactions. The input are rdf files generated with a modified version of Faunus packages (https://github.com/mlund/faunus). Codes were employed to calculate pmf curves in the publication: https://doi.org/10.1016/j.virusres.2022.198838. Here is showing an example simplified!
paper_2022_ns1_zikv_protein_interacting_with_membrane
Scripts for analysis of MD simulations for two NS1 of Zika virus interacting with a membrane.
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