Related Issues (20)
- Cannot convert output from Scirpy to dandelion HOT 19
- airr validation fails when converting demo dataset to_airr_cells HOT 1
- minor bug? non-productive contigs appearing as productive and order of contigs HOT 5
- spatial airr data HOT 3
- Installation problem HOT 6
- error for computing nucleotide sequence identity using multiple samples HOT 2
- Error in loading filtered_contig_annotations.csv HOT 3
- does not merge correctly using merge_with_ir HOT 2
- ir.tl.clonotype_network() The function runs with "Aborted (core dumped)" error? HOT 2
- Speed up read_airr
- speed up define_clonotypes
- Autoencoder-based sequence embedding HOT 10
- Scalability to >1M cells
- antigen specificity prediction
- switch to cookiecutter-scverse template
- Anything to do about plt.subplot HOT 4
- clean up usage of _is_na, _is_true and _is_false
- Allow only high confidence filtering when reading Cell Ranger output HOT 6
- MuData API considerations HOT 2
- Split IO into separate package HOT 2
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from scirpy.