Coder Social home page Coder Social logo

Scale up TCR-dist about scirpy HOT 6 CLOSED

scverse avatar scverse commented on July 18, 2024
Scale up TCR-dist

from scirpy.

Comments (6)

grst avatar grst commented on July 18, 2024

In GitLab by @grst on Mar 20, 2020, 18:27

Currently it uses dense matrices... This gets inefficient and uses a lot of RAM for >5k cells.
Using sparse matrices this should (hopefully) scale up to 100k and more.

from scirpy.

grst avatar grst commented on July 18, 2024

In GitLab by @grst on Mar 20, 2020, 18:30

assigned to @grst

from scirpy.

grst avatar grst commented on July 18, 2024

In GitLab by @grst on Mar 23, 2020, 11:25

mentioned in merge request !22

from scirpy.

grst avatar grst commented on July 18, 2024

In GitLab by @grst on Mar 24, 2020, 18:37

can now easily handle 20k cells on my laptop.
There might still be some tweaks how to further improve performance, but that's for later.

from scirpy.

grst avatar grst commented on July 18, 2024

In GitLab by @grst on Mar 24, 2020, 18:43

closed via merge request !22

from scirpy.

grst avatar grst commented on July 18, 2024

In GitLab by @grst on Mar 24, 2020, 18:43

mentioned in commit 1add9f4

from scirpy.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.