schulzlab Goto Github PK

aeron

Alignment, quantification and fusion prediction from long RNA reads

bisquick

chromaclique

codefinder

Learning translation code between sets of DNA motifs

epigenomeanalysistutorial-2020

This website contains material for an epigenome analysis tutorial that covers ATAC-seq analysis and integration with TF motifs and gene expression

epigenomicstutorial-ismb2017

Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague

epiregiodb-1

Analysis and retrieval of Regulatory EleMents (REMs) linked to genes

fame

gaze

single cell regulatory analyzer

iseelect

Shiny server wrapper for analysis of data with ISEE

jami

Java tool for computing conditional mutual information from large datasets

kreation

automated k-mer range estimation for de novo transcriptome assembly

liver-steatosis-supplementary

This project hosts additional scripts part of the recent paper about epigenomic analysis in liver steatosis

maketitlesgreatagain

Helper file to fix wrong capitalisation in latex references

massif

Improved motif enrichment analysis using protein domain type information

metacellar

metacelling things

oases

De novo transcriptome assembler for short reads

ontologyeval

OntologyEval is an approach that can be used to compare batch effect correction of normalisation methods for cell heterogeneous genome-wide datasets, like RNA-seq. It uses the cell ontology to evaluate whether datasets derived from different cell types are similar to one another.

orna

Fast in-silico normalization algorithm for NGS data

pairedsc

rapid

RAPID is a set of tools for the alignment, and analysis of genomic regions with small RNA clusters derived from small RNA sequencing data.

rjami

R-wrapper for JAMI: Computation of conditional mutual information from large datasets

rnafunctionprediction

Methods for supervised prediction of RNA function

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

scbp

single cell analysis of bidirectional promoters

scrna_tf_integrator

Integrate scRNA data with TF binding site prediction analysis

seecer

Error Correction for non-uniform coverage sequencing data

singlecellstitchit

Learning enhancer-gene interactions from single cell data

sneep

SNp Exploration and Analysis using EPigenomics data

sos

Automated de novo transcriptome assembly