Comments (15)
I think that means all modes of the first open bnd are dry. This could be related to DEM interpolation. You may want to check the depths of those nodes in the hgrid.
from schism.
Hi Soroosh,
This means one of your open boundaries is completely dry.
Fei
from schism.
Thank you @feiye-vims, that's strange because I didn't really change my meshing (subsetting) method. Could this be related to interpolating DEMs on my mesh if you have to guess?
Also which nodes should I look at the first nodes of the first open boundary segment? Based on ndx=1
?
from schism.
This is very odd, the first couple of elevations in the boundary (from hgrid.grd
file) are (coordinates comments manually added for easier read):
1 ! total number of ocean boundaries
268 ! total number of ocean boundary nodes
268 ! number of nodes for ocean_boundary_0
249994 ! -59.99968778 43.43439751 1003.01256100
250403 ! -59.99994778 43.37117561 1240.92041020
250797 ! -59.99979179 43.29860084 1584.45312500
251209 ! -59.99981273 43.18319423 2014.39843750
.
.
.
And since the elevation is positive down, these already should be wet, right?
from schism.
Yes.
Did the crash happen at the first time step?
from schism.
It seems to be happening during the second timestep:
time stepping begins... 1 1152
before GetGAHMFields
maxTrackRecords: 170
Working on time frame: 150.000000000000
Requested output time: 150.000000000000
, skipping generating data for this time; 151200.000000000
172800.000000000 194400.000000000 216000.000000000
237600.000000000 259200.000000000 280800.000000000
302400.000000000 324000.000000000 345600.000000000
367200.000000000 388800.000000000 410400.000000000
432000.000000000 453600.000000000 475200.000000000
496800.000000000 518400.000000000 540000.000000000
561600.000000000 583200.000000000 604800.000000000
626400.000000000 648000.000000000 669600.000000000
691200.000000000 712800.000000000 734400.000000000
756000.000000000 777600.000000000 799200.000000000
820800.000000000 842400.000000000 864000.000000000
885600.000000000 907200.000000000 928800.000000000
950400.000000000 972000.000000000 993600.000000000
1015200.00000000 1036800.00000000 1058400.00000000
1080000.00000000 1101600.00000000 1123200.00000000
1144800.00000000 1166400.00000000 1188000.00000000
1209600.00000000 1231200.00000000 1252800.00000000
1274400.00000000 1296000.00000000 1317600.00000000
1339200.00000000 1360800.00000000 1382400.00000000
1404000.00000000 1425600.00000000 1447200.00000000
1465200.00000000 1468800.00000000 1490400.00000000
1512000.00000000 1533600.00000000 1555200.00000000
1576800.00000000 1598400.00000000 1620000.00000000
1641600.00000000 1663200.00000000 1684800.00000000
1706400.00000000 1728000.00000000 1749600.00000000
1771200.00000000 1792800.00000000 1814400.00000000
after GetGAHMFields
done adjusting wind stress ...
done flow b.c.
done hvis...
done backtracking
done 1st preparation
done 2nd preparation
done solver; etatot= 300570572.613247 ; average |eta|=
538.075471512410
done solving momentum eq...
done solving w
done solving transport equation
done recomputing levels...
done density and flux calculation...
TIME STEP= 1; TIME= 150.000000
before GetGAHMFields
Working on time frame: 300.000000000000
Requested output time: 300.000000000000
, skipping generating data for this time; 151200.000000000
172800.000000000 194400.000000000 216000.000000000
237600.000000000 259200.000000000 280800.000000000
302400.000000000 324000.000000000 345600.000000000
367200.000000000 388800.000000000 410400.000000000
432000.000000000 453600.000000000 475200.000000000
496800.000000000 518400.000000000 540000.000000000
561600.000000000 583200.000000000 604800.000000000
626400.000000000 648000.000000000 669600.000000000
691200.000000000 712800.000000000 734400.000000000
756000.000000000 777600.000000000 799200.000000000
820800.000000000 842400.000000000 864000.000000000
885600.000000000 907200.000000000 928800.000000000
950400.000000000 972000.000000000 993600.000000000
1015200.00000000 1036800.00000000 1058400.00000000
1080000.00000000 1101600.00000000 1123200.00000000
1144800.00000000 1166400.00000000 1188000.00000000
1209600.00000000 1231200.00000000 1252800.00000000
1274400.00000000 1296000.00000000 1317600.00000000
1339200.00000000 1360800.00000000 1382400.00000000
1404000.00000000 1425600.00000000 1447200.00000000
1465200.00000000 1468800.00000000 1490400.00000000
1512000.00000000 1533600.00000000 1555200.00000000
1576800.00000000 1598400.00000000 1620000.00000000
1641600.00000000 1663200.00000000 1684800.00000000
1706400.00000000 1728000.00000000 1749600.00000000
1771200.00000000 1792800.00000000 1814400.00000000
after GetGAHMFields
done adjusting wind stress ...
from schism.
from schism.
I turned off meteo forcing (by setting nws=0
), but I still run into the same error:
102: ABORT: STEP: wetted cross section length on open bnd <=0; boundary ndx= 1 , length= 0.000000000000000E+000
time stepping begins... 1 1152
done adjusting wind stress ...
done flow b.c.
done hvis...
done backtracking
done 1st preparation
done 2nd preparation
done solver; etatot= 300570572.613247 ; average |eta|=
538.075471512410
done solving momentum eq...
done solving w
done solving transport equation
done recomputing levels...
done density and flux calculation...
TIME STEP= 1; TIME= 150.000000
done adjusting wind stress ...
Now that I know approximately where I should look for the issue, let me spend some more time on my own to see if I can get more info about why it's erroring out. Maybe it's something very simple that I'm missing ...
from schism.
from schism.
@josephzhang8 @feiye-vims, I'd like to take you up on your kind offer to pass the setup that fails for me to you for help. You can download it from here:
https://drive.google.com/file/d/1TgiTBEj--WqfAmKYy9Zk4A5gJCHg8OCZ/view?usp=sharing
Thanks again
from schism.
from schism.
from schism.
Thank you @josephzhang8! I use pyschism
through coupledmodeldriver
to setup the model. I can try a basic script directly in pyschism
and if I see the same problem, maybe this issue can be moved to pyschism
repo.
While I'm testing, @cuill do you know if anything related to default elevation IC has changed in recent versions of pyschism
?
from schism.
@SorooshMani-NOAA Yes, I made changes for elev_ic, which uses the original depth info from hgrid.gr3 not reversed values.
branch 5b5ded0d98ffb0776a1a99538cb33f99d1ffa1a8
from schism.
OK I see, I'll update the client scripts then, thanks!
from schism.
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