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Name: Structural Bioinformatics Laboratory
Type: Organization
Location: San Diego Supercomputer Center, UCSD
Name: Structural Bioinformatics Laboratory
Type: Organization
Location: San Diego Supercomputer Center, UCSD
BioJava examples in Jupyter Notebooks
OBSOLETE: Prototype Neo4j Knowledge Graph for Coronavirus outbreaks (see NEW VERSION: https://github.com/covid-19-net/covid-19-community)
Comparison of Dataframe libraries for parallel processing of large tabular files on CPU and GPU.
Download and processes Biological Repositories for ingestion into Knowledge Graphs
kg-import automates the ingestion of heterogeneous datasets into a Knowledge Graph.
Create Node and Relationship files from BioPortal ontologies for import into Property Graphs
Methods to predict metal binding sites in a protein by its amino acid sequence
GeoPandas GeoDataFrames for Mexican States and Municipalities
Repository for the development of new methods for the mmtf-spark project
Benchmark mmtf compression/decompression
Data files for mmtf projects
Methods for mapping genomic data onto 3D protein structure.
Hackathon projects repository for MMTF Workshop 2018
Methods for mapping proteomics data on 3D protein structure.
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Benchmarks for mmtf-pyspark project
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Structural Bioinformatics Training Workshop & Hackathon 2017
Structural Bioinformatics Training Workshop & Hackathon 2018
Demo of Neo4j graph visualization with the ipycytoscape Jupyter Lab extension
Obsolete student projects: Methods for fast structural database searches and clustering
SARS-CoV-2 Variant metadata
Benchmark and demo of representing SIFTS UniProt to PDB mappings in columnar data formats.
Obsolete project: Provides high-density compression and decompression of biomolecular structures.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.