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Structural Bioinformatics Laboratory's Projects

coronavirus-knowledge-graph icon coronavirus-knowledge-graph

OBSOLETE: Prototype Neo4j Knowledge Graph for Coronavirus outbreaks (see NEW VERSION: https://github.com/covid-19-net/covid-19-community)

df-parallel icon df-parallel

Comparison of Dataframe libraries for parallel processing of large tabular files on CPU and GPU.

kg-bio icon kg-bio

Download and processes Biological Repositories for ingestion into Knowledge Graphs

kg-import icon kg-import

kg-import automates the ingestion of heterogeneous datasets into a Knowledge Graph.

kg-onto icon kg-onto

Create Node and Relationship files from BioPortal ontologies for import into Property Graphs

mm-dev icon mm-dev

Repository for the development of new methods for the mmtf-spark project

mmtf-genomics icon mmtf-genomics

Methods for mapping genomic data onto 3D protein structure.

mmtf-pyspark icon mmtf-pyspark

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

mmtf-spark icon mmtf-spark

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

quickstructuresearch icon quickstructuresearch

Obsolete student projects: Methods for fast structural database searches and clustering

sifts-columnar icon sifts-columnar

Benchmark and demo of representing SIFTS UniProt to PDB mappings in columnar data formats.

structurecodec icon structurecodec

Obsolete project: Provides high-density compression and decompression of biomolecular structures.

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