Sasi Arunachalam's Projects
Tools for querying and analysis of genomic data
:package: Automate Absolute Copy Number Calling using 'ABSOLUTE' package
R package to create cell pictures.
This program extracts mouse reads from SAM file.
This program extracts unaligned reads (*) from SAM files.
Miscellaneous bioinformatics scripts written by me for myself and other people
First repo
machine_learning_examples
miRNAseq regulatory networks
Useful bash one-liners for bioinformatics.
Set of real world data science tasks completed using the Python Pandas library
This program creates inputs for pyclone run from SNV ,copy number data
This module has list of small scripts that I wrote /used for my data processing or plots in nest generation sequencing data analysis
This program removes mouse reads /ambiguous reads from the aligned SAM files .
This program removes mouse contamination from BAM files
RISE: "Live" Reveal.js Jupyter/IPython Slideshow Extension
RNA-seq workflow: gene-level exploratory analysis and differential expression
Config files for my GitHub profile.
Toolkit for processing sequences in FASTA/Q formats
Lecture Slides and R Sessions for Trevor Hastie and Rob Tibshinari's "Statistical Learning" Stanford course